Package: popdemo 1.3-1
popdemo: Demographic Modelling Using Projection Matrices
Tools for modelling populations and demography using matrix projection models, with deterministic and stochastic model implementations. Includes population projection, indices of short- and long-term population size and growth, perturbation analysis, convergence to stability or stationarity, and diagnostic and manipulation tools.
Authors:
popdemo_1.3-1.tar.gz
popdemo_1.3-1.zip(r-4.5)popdemo_1.3-1.zip(r-4.4)popdemo_1.3-1.zip(r-4.3)
popdemo_1.3-1.tgz(r-4.4-any)popdemo_1.3-1.tgz(r-4.3-any)
popdemo_1.3-1.tar.gz(r-4.5-noble)popdemo_1.3-1.tar.gz(r-4.4-noble)
popdemo_1.3-1.tgz(r-4.4-emscripten)popdemo_1.3-1.tgz(r-4.3-emscripten)
popdemo.pdf |popdemo.html✨
popdemo/json (API)
| # Install 'popdemo' in R: |
| install.packages('popdemo', repos = c('https://iainmstott.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:2f6b882b1b. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 17 2024 |
| R-4.5-win | NOTE | Oct 17 2024 |
| R-4.5-linux | NOTE | Oct 17 2024 |
| R-4.4-win | NOTE | Oct 17 2024 |
| R-4.4-mac | NOTE | Oct 17 2024 |
| R-4.3-win | OK | Oct 17 2024 |
| R-4.3-mac | OK | Oct 17 2024 |
Exports:AseqblockmatrixboundsCohen.cumulativeCohenDconvergence.timeconvtdreigselasfirststepattinertiainertia.tfainertia.tfamatrixinertia.tfsensinertia.tfsensmatrixis.matrix_ergodicis.matrix_irreducibleis.matrix_primitiveisErgodicisIrreducibleisPrimitiveKeyfitz.deltaKeyfitzDKreissmatMatlab2RmaxampmaxattminCSnmatnprojntimeplotprojectprojection.distanceprojectionDprojtypeR2Matlabreacreactivitysensshowstochtfatfa_inertiatfa_lambdatfam_inertiatfam_lambdatfamatrixtfs_inertiatfs_lambdatfsenstfsensmatrixtfsm_inertiatfsm_lambdatruelambdavecvectype
Dependencies:codaexpmlatticeMASSMatrixMatrixModelsmcmcMCMCpackquantregSparseMsurvival
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Provides tools for demographic modelling using projection matrices | popdemo-package popdemo |
| Block-permute a reducible matrix | blockmatrix |
| Calculate Cohen's cumulative distance | CohenD |
| Calculate time to convergence | convt |
| Calculate damping ratio | dr |
| Calculate asymptotic growth | eigs |
| Calculate elasticity matrix | elas |
| Calculate population inertia | inertia |
| Determine ergodicity of a matrix | isErgodic |
| Determine reducibility of a matrix | isIrreducible |
| Determine primitivity of a matrix | isPrimitive |
| Calculate Keyfitz's delta | KeyfitzD |
| Calculate Kreiss bounds | Kreiss |
| Read Matlab style matrices into R | Matlab2R |
| Calculate maximal amplification | maxamp |
| Calculate maximal attenuation | maxatt |
| Polar bear matrices | Pbear |
| Plot transfer function | plot.tfa |
| Plot transfer function | plot.tfam |
| Deprecated functions in the popdemo package | Cohen.cumulative Cohen.cumulative-deprecated convergence.time convergence.time-deprecated firststepatt firststepatt-deprecated inertia.tfa inertia.tfa-deprecated inertia.tfamatrix inertia.tfamatrix-deprecated inertia.tfsens inertia.tfsens-deprecated inertia.tfsensmatrix inertia.tfsensmatrix-deprecated is.matrix_ergodic is.matrix_ergodic-deprecated is.matrix_irreducible is.matrix_irreducible-deprecated is.matrix_primitive is.matrix_primitive-deprecated Keyfitz-delta-deprecated Keyfitz.delta minCS minCS-deprecated popdemo-deprecated projection.distance projection.distance-deprecated reactivity reactivity-deprecated tf tf-deprecated tfa tfa-deprecated tfamatrix tfamatrix-deprecated tfsens tfsens-deprecated tfsensmatrix tfsensmatrix-deprecated |
| Project population dynamics | project |
| 'Projection' object S4 class | Aseq Aseq,Projection-method bounds bounds,Projection-method mat mat,Projection-method nmat nmat,Projection-method nproj nproj,Projection-method ntime ntime,Projection-method Projection Projection-class projtype projtype,Projection-method show show,Projection-method vec vec,Projection-method vectype vectype,Projection-method |
| Plot methods for 'Projection' objects | plot plot,Projection,missing-method Projection-plots |
| Calculate projection distance | projectionD |
| Convert matrices into Matlab style strings | R2Matlab |
| Calculate reactivity and first-timestep attenuation | reac |
| Calculate sensitivity matrix | sens |
| Project population dynamics | stoch |
| Transfer function Analysis | tfa_inertia |
| Transfer function analysis | tfa_lambda |
| Transfer function Analysis | tfam_inertia |
| Transfer function analysis | tfam_lambda |
| Calculate sensitivity of inertia using transfer functions | tfsm_inertia tfs_inertia |
| Calculate sensitivity using transfer functions | tfsm_lambda tfs_lambda |
| Desert tortoise matrix | Tort |
| Calculate asymptotic growth | truelambda |
